PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G157700.1
Common NameB456_007G157700, LOC105803325
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 546aa    MW: 59364.4 Da    PI: 7.7508
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G157700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27e-09350397455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  Gorai.007G157700.1 350 SHSLAERVRREKISERMKLLQNLVPGC----NKVTGKALMLDEIINYVQSLQ 397
                         8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.64E-17344415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.24E-10344401No hitNo description
PROSITE profilePS5088815.428346396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16346414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-6350397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-10352402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MENQFFVNAG IPSPAPPLHF GSSMPMSDWQ SLSSAMEIQS QDCFPTPNWE KPTDYGLQFE  60
SALSSMVSSR AASNCNVSSE SLIIRELIGK LGSIGNGGEI PPHSQPLLAS YINGNNSSNT  120
SCYSTPLNSP PKLNLPMVDS LVKEKLPPKG LNSSVADFSA DPGFAERAAK FSCFGSRSFN  180
GRTTQFGPKD NTEFAAFRSN PLAANAKLPR VSSSPSIKAM VSQGTTTNKN TPLQDRSELA  240
NSQEESIVSE QNPNGEPGLK ASNSRKRKAV PKAKTKETSS SPSANASKVT EPNEASNEKR  300
CKLSDSNGNE NGSAKAEEDA KGDKANNTKA LEPPKDYIHV RARRGQATDS HSLAERVRRE  360
KISERMKLLQ NLVPGCNKVT GKALMLDEII NYVQSLQRQV EFLSMKLASV NTRLDFNVES  420
LMSKDIFQRN NTLQQPIFAI NSSASTFFGH QPQQNPALHS NMSNGTMTQC SVDPLDTAIC  480
PKLNTHLPQI NQFVETVPPQ YPTFCEGDLE TIVHMGFGQN QSQDMALHSQ NFQGSNQVSH  540
MKVEL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490903.10.0PREDICTED: transcription factor bHLH62 isoform X2
TrEMBLA0A0D2SKX50.0A0A0D2SKX5_G
STRINGPOPTR_0002s24990.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-133bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]